Scaffold Ga0210134_1003048

Overview

Basic Information

• Taxon OID: 3300025950
• Scaffold ID: Ga0210134_1003048
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2505
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.224518
  • Long. (^o): -122.019257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020200	Metagenome	225	Y
F021563	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210134_10030483	F020200	AGG	MCWVCERLEHLITSWNEEQEFQEQTSSDDYHRGLSKGFSECVKALSEAVASMRLKGICEKFPEYERVLNDKQRLDILEDLLKLRDEDSNQE
Ga0210134_10030485	F021563	N/A	MEDLKLLLIDRLKSQGMDSSLIPSFLKALTSIISSEPGIEPAQANLKLNSLGWNEVAIDYHCLQIAIACLDADTKDQRNMIIQTRILKDADPA