Scaffold Ga0207667_10000029

Overview

Basic Information

• Taxon OID: 3300025949
• Scaffold ID: Ga0207667_10000029
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 329192
• Total Scaffold Genes: 339
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 277 (81.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059118	Metagenome	134	N
F080973	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207667_10000029241	F080973	GGAG	VALPTQGDVREMIAGAIGQLTGTPTCDVDLGPSRVLIHSDARCGYNWSYPDAMVKARFRPFVHRAVGMVRDRYPILR
Ga0207667_10000029271	F059118	AGGAG	MLLIALMGGLLDNPPAHDPLVPPTRVTTSFVCHDTTRTITVARGIGRDAVVALTANGKPVVGTAMSAIRASLAPLTAIDDVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGSGGQAAVRDV