Scaffold Ga0210088_1053041

Overview

Basic Information

• Taxon OID: 3300025948
• Scaffold ID: Ga0210088_1053041
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 640
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.209923
  • Long. (^o): -122.033409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041848	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210088_10530411	F041848	GGAG	MTNPSETITAKQYSTAVAARGALFVSIVSVAHSFAHIRIGAVGANNLEVERLNIGEFVHYECPDGALYEIRLLSVEGFDTATLLVTRVK