Scaffold Ga0207661_10000013

Overview

Basic Information

• Taxon OID: 3300025944
• Scaffold ID: Ga0207661_10000013
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 348811
• Total Scaffold Genes: 300
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (56.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054123	Metagenome / Metatranscriptome	140	Y
F064021	Metagenome	129	Y
F081682	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207661_10000013299	F054123	AGG	MNILHAITLAALLHHAPAAPVVTCHTGTVSYKFVGTPGATFTYAGAKYSLPPSGSIELLSDSGSKAYLAANGRTLPLDVWPIDAFGTRTVPLQAPATAGDNTPNTINN
Ga0207661_100000133	F064021	AGG	MKNTLLAVSVAALTLAGCTSAMNTALPPGRMSDAGIIRPCHRDHRDAQVCGNAIFNQTVIAQIHTGQTLTDVRAIMRHDAERRTVDGSNESWGYITNYDDKVMTWIAFTDRKVSAVTQQPWVRD
Ga0207661_1000001370	F081682	GAGG	MKTRILLTLAFAMCAVTAFGVQPGAIDHNPPGCMLEGEMPIMQVETADQGLLRAYFRRQGATDWCFVDGKNLGKVSQVTLPKFDPNEAIEYYFIVLDGKRIVAKSPKIYNAKNEHHCDAPYARHAIMLTLECLPPGTNPISMSAGYAAKTIIGGPPQSPEKPEQTASNTSSKN