Scaffold Ga0207711_10000019

Overview

Basic Information

• Taxon OID: 3300025941
• Scaffold ID: Ga0207711_10000019
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 412779
• Total Scaffold Genes: 444
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 314 (70.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F015476	Metagenome / Metatranscriptome	254	Y
F017066	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207711_10000019168	F015476	N/A	MEVLRNLFGNVTAGIIRLLVTVGILAAVYFFIVKPALETTEKISHEVNVNVQKGFEQTGLTDINKTMQDVNRQVQREIKRSLRQTPSHSAANKLIRCIQRAHQDVHKIERCNDRYG
Ga0207711_10000019430	F002483	GGA	VPPLPGLKRRWRREAAAGAKAAARKPAPPPRPRSYYAVAGVALEEETERLRSLPVFADGPLARLAPALKVRRASKRPNRLGFAVPSEFRLSVTAYPGIRPGDVLETLLHELVHLHVGRAAEAHAWHGPTFKRTLAQAMREAYGIALPTPRSTLHGTYAEAIERETAKTRPEDGFSRSR
Ga0207711_10000019431	F017066	N/A	VILPLAHHNAIVALPVFAPALVVILVLVVHHLRERRHWDDEEETNA