Scaffold Ga0207704_10093569

Overview

Basic Information

• Taxon OID: 3300025938
• Scaffold ID: Ga0207704_10093569
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1982
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014512	Metagenome	262	Y
F085777	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207704_100935691	F085777	N/A	RRLQIAWHAVAGEVDLATGVAQIPRIAASFRIVRDPIAMFAEMRDAPRKESESRAGKVATAQAMLHREGYSALVPGKPIVRNGVYLEWMSDPEPRYQMLIPLGKVRAAANGSVVDRPRPVRGAAPIAGTIGWREFTDDEWVFHNNDDDYLPLKGIGELLAANQRDRGFVYFYYVATVRVEEQEDDRRLTSLEWFFHGLPDVQRRWREGTLVAPRPPEE
Ga0207704_100935693	F014512	GGAG	LLPLHRRPPVSLPKRLAFLLIIVALAAHSPSSAGAQTPTCQMKVVSCNYAHLYSGQFSWSNTINGPASQFHEQVTVSVNNGVADCVGTVRETDNGQTQSGTISGPGLFAVEFERDSADKLVYRITAACPTAAGMGSPVQKAELGHHDLETYQQRATTIAQKVLKGGSNYPAPETDAVNHVTGTVQVTWNITRP