Scaffold Ga0207670_10080875

Overview

Basic Information

• Taxon OID: 3300025936
• Scaffold ID: Ga0207670_10080875
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2273
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013460	Metagenome / Metatranscriptome	271	Y
F049752	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207670_100808752	F049752	AGGAG	MENSLTAWAQEMAAIAERKTRAQDKRQNTSHLSQTQAEAAWVNGMDQVVRILTKLVQALKQTQRFPDLNVLSYAQSPQGTTTYMRRGTLLSVRGLQEESASIEFEIDTTPPFRADLLAPTVRVLSSPHPHHSASLRRAHWSIGVSVHGEIVWQKLNPELEGIAEDNSEDILKNFLAFSLLTA
Ga0207670_100808753	F013460	AGGAG	MSQVQAMDVGQTIHCLEVLHAVQTDSHTSGWYWGDVRGKAAVGAATGALWRKDLICSRIGSSPFRLTPKGEAFLNTHRKAWEAFLTNTDRPATLAHFSHALTQMPEVHDARDALP