Scaffold Ga0207670_10000021

Overview

Basic Information

• Taxon OID: 3300025936
• Scaffold ID: Ga0207670_10000021
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 155646
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 101 (73.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008181	Metagenome / Metatranscriptome	337	Y
F028820	Metagenome / Metatranscriptome	190	Y
F062200	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207670_10000021114	F062200	GGAGG	MWRLTAVLMAVAALVGLAMFHGTVQAQPPGRPAADKQLICHVSDDNGAHIIEVAEPAVPAHLANHGDCIINSEDRSLIGDPCDPTDANNNDICDIQP
Ga0207670_1000002113	F008181	AGGA	MDRNWVVLGVSLMLWGLLFIWILRVERRVRDVEKR
Ga0207670_100000212	F028820	AGGAG	MKRAATTLIVSLLALVASATFANAALRVPQVPVVGGGLQAYLISVGESINVNTDQDANQTWSHTISGTTTYTVQFQSSPNANIQQFGMYNASAVIPPLFFLLSGSVGPLGFSTATFKPGNILVVNRFDALANFLSTTTFGGVDPNNFGFYLSVQAGTVFTQDGRNPGGLARAITFQGTGANAGTWWLCWDEPLAGAPGDQDFDDLVVMMESVNPTPVSKTSWGELKTRFR