Scaffold Ga0207686_10033548

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10033548
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_100335483	F016064	N/A	MAAFSRETLEYRGYSLKVTFASPQWQVLIDVVVKDRPVLPPAQQLVKGWEEEETLKRAKTRIDLLIESPSLH
Ga0207686_100335484	F016418	GAGG	MSYRGYDLEQKTLMVGWQITITKDDKFVHNGSVAKSLVSAVGEAEKFIDRVIAEADLAGRASPCQL
Ga0207686_100335485	F029574	GGA	MLKGIEKMERSARYIVRLQKDGQYTVVMSRPEWANREIPGFATEVEAKAWIAGRRQQSRL