Scaffold Ga0207686_10000394

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10000394
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30367
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009274	Metagenome / Metatranscriptome	320	Y
F069061	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_1000039413	F069061	N/A	MVFDFRYKSVSGQWKSSGHRKGETRDAAFAALEAKNGPMPAGKYMSRPRDGRTKNWDLFTRP
Ga0207686_1000039415	F009274	GAG	MPFWIARRAAPAVWKRIPWKMVWAVVVWLGGKGRERIDENLTAKEQSEFWRLLKKSKGRPNTLPQRDRTRMKNIAGKAIRGS