Scaffold Ga0207706_10105456

Overview

Basic Information

• Taxon OID: 3300025933
• Scaffold ID: Ga0207706_10105456
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2480
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029684	Metagenome	187	Y
F038428	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207706_101054561	F038428	AGGAGG	MKLLIPAIGLALSVTINAEEARSIKYNTPSGSQIIIRDLGVIPGGTTSSGLAINNEPVIVGLANDSTFALQRPFWDADTGVIIGFADNFNPASTAIPEHMNESREMGGTEVYGDNVYQGIYWNPAGQAFVLPPLAGFDPVYGALHTRGHGINSQGQLVGT
Ga0207706_101054563	F029684	N/A	CEDLLSFQVRCKATGGGGHKLQAKLTLTDTSHSGEQVTMTVDGVPTPVTINGNKAQLLINNPAPGQHTIELTDPAGCFPPSMPSCQ