Scaffold Ga0207644_10065524

Overview

Basic Information

• Taxon OID: 3300025931
• Scaffold ID: Ga0207644_10065524
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2642
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006285	Metagenome / Metatranscriptome	377	Y
F042399	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207644_100655243	F006285	N/A	MAKVHEYILVAVDGTCGVTKSNGPICFQQSRQEVGGHFEAYDPQLGDGYTAQVNEDGRRFKSNALFDDVAGNVLIGRSHGSEMWGLSVEQRAEVLTLLKTKR
Ga0207644_100655244	F042399	N/A	MRTVSADRASIDYWQDYGAGRQVLKSHFGIRVWQDRCCAITNVAAETPSLFGKPHSIPVDLSMGAGQHSLSNVVSEHMNHHPESDLMAVLTGKKAFHEALG