Scaffold Ga0207664_11048517

Overview

Basic Information

• Taxon OID: 3300025929
• Scaffold ID: Ga0207664_11048517
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003418	Metagenome / Metatranscriptome	488	Y
F005651	Metagenome / Metatranscriptome	394	Y
F025580	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207664_110485171	F003418	N/A	TTNCIFDGSVLYVTATKVPDIEASQRTGSFWRLQTDATGLELIPGRL
Ga0207664_110485172	F005651	GGAGG	MKPDERSFRIMLAADRYVNPPPDGVDAVAVAEQTGWGIMQLPADDYPPEVAGPLLAEVAEQLEEFSRHGYAFVLVGERAGLAEALAQVGVPIPDQISPRTPRQLADFLGGQPAPSAG
Ga0207664_110485173	F025580	N/A	SMGVTVTSSDPLRGGRPEWPDGTAEHVSGEGIFVEEIRKALAKRGIGFPRVAGETHALPGHDEAAQRAGLESALEG