Scaffold Ga0207664_10412267

Overview

Basic Information

• Taxon OID: 3300025929
• Scaffold ID: Ga0207664_10412267
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1203
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016860	Metagenome / Metatranscriptome	244	Y
F028339	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207664_104122671	F016860	AGGAG	VNPLTPRSPLGTFGTGGIPQQYVHGTTANIYNNTPLALLGPKWDELLGEARSLSSAGQHAIAIIIAAAAGEWATEFVLERLMDAAKDHSKSVRDLVEMSERLLVTWSFEADRVRKAFHDLTGENPDRQSWWGDWMWSRRQRHDIAHRGVLTADATAARKCIDVAALHIAYLTEVVMRRAP
Ga0207664_104122672	F028339	N/A	WIVLGCATLVAGCPNFPPADDRSFPGAGQLAGDERRESRALELAESNCVSQGKDVDAGRVEGQMVYDCVARQP