Scaffold Ga0207700_10291974

Overview

Basic Information

• Taxon OID: 3300025928
• Scaffold ID: Ga0207700_10291974
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F042033	Metagenome / Metatranscriptome	159	Y
F070583	Metagenome / Metatranscriptome	123	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207700_102919741	F042033	AGGA	MNDQNRVLIRRGARSLNEEEIQRVGGGLNTETLCTVPSATCPNNDGDASIGECGPRC
Ga0207700_102919742	F081702	GGAG	MNDQTRVLIRQGSRELSPEEVEQVGGGFNTLSITFGPNGRDGDGLLGEA
Ga0207700_102919743	F070583	AGGAG	MNDQSRVLIRRGARELDREETKKVSGGLNTQTACTWDPDLGGRDGDGPPEC
Ga0207700_102919744	F011259	AGGAG	MSRQDNRVLARTGARELTIEEVDQVSAAMAAHTNVCTAIMATGTATGSGDGDGCSDTDKDAHFI
Ga0207700_102919745	F037883	N/A	QQFTKENAMSNQNETNRVLLRVGARMLTEEEVESVSAAGPPCELTFTHLPKGGSDEDTFC