 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025928 Open in IMG/M |
| Scaffold ID | Ga0207700_10000003 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 500797 |
| Total Scaffold Genes | 540 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 367 (67.96%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003627 | Metagenome / Metatranscriptome | 476 | Y |
| F016854 | Metagenome / Metatranscriptome | 244 | Y |
| F031439 | Metagenome / Metatranscriptome | 182 | Y |
| F055944 | Metagenome | 138 | Y |
| F064160 | Metagenome / Metatranscriptome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207700_10000003179 | F003627 | N/A | MDRESARQSMRAGLVAGGIAAAIFALSFVAAFLYIAS |
| Ga0207700_1000000320 | F055944 | N/A | MLLLGFAGGTVIALLLGAKNLGTAFGVAQVCFAAVVVYVLLRD |
| Ga0207700_10000003234 | F064160 | N/A | VKLLLIPLAIVAFVIFLLILGAIGLAVAFAVLYVLGKFWRLISRAGRPRRRRASA |
| Ga0207700_10000003384 | F016854 | AGG | MAAPNVKSLPKPGEVWLSCPPYLMLARIVEVDTECEPPVVSYELHDDDGSLLTAVEHAQLDRGWWRAFQPLKRHFG |
| Ga0207700_10000003411 | F031439 | AGG | MYLIPIAVIILLALIAVAWSPLFALIFFAIGFVSFLAYAAMRPRADEKLAPPEQPGRQPHHEGGEPTGIWGERRSS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |