Scaffold Ga0207659_10212785

Overview

Basic Information

• Taxon OID: 3300025926
• Scaffold ID: Ga0207659_10212785
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013837	Metagenome / Metatranscriptome	268	Y
F043689	Metagenome / Metatranscriptome	156	Y
F050357	Metagenome / Metatranscriptome	145	N
F051250	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207659_102127851	F050357	N/A	ANRQKLVGMVYLDKGVLDLDIPDDHERALVEDVLDQTGQVTWSFSRFDEGEWQENIAEPRTDRWLWFVVANILYPMGYQADLGISEDGEPTTG
Ga0207659_102127852	F043689	AGGAGG	MTTLMDTVRIEAPKRSPVRPASPLDPSWDDGSQIPSSERSVRDRSRSTQWDLLAMGKGRSLWREAA
Ga0207659_102127853	F013837	GGAGG	MTTHMDLIGKAPLPPVKQAVSLDTPRDAATDPRSLERSFEVESPGGHARTVVGRLAYFDEEAQTYMVLTGSGVLVRVPLRDITSSSGDPRSGSIVADALSKMSRLRNATTVSRP
Ga0207659_102127854	F051250	AGG	MTSSRFMWLVVAGRGHSSEQRGFTEALYDAKAKVNEHAERLGRKGRTDWFGFVLDLDRPTVIAPPGSTQPILGWERVYFVDGRG