Scaffold Ga0207659_10000162

Overview

Basic Information

• Taxon OID: 3300025926
• Scaffold ID: Ga0207659_10000162
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39794
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024574	Metagenome / Metatranscriptome	205	Y
F066908	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207659_1000016216	F024574	GAGG	VKKPAMLHRGVMAVMCFGVLGLITAGCDDMPEHAPMVNAADFRPGIILEPTPITFVSRSGVPCPLGGFPFNPSLHLVVTAGVQDVTLNSVTIHMIDGSNLGGPSITVPQPELAARFGSTLIVSTATRDFALRPDFGCIARVPTALRGSAVLVDQRGVPQTIVVQGRVQ
Ga0207659_1000016217	F066908	N/A	MRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS