Scaffold Ga0207650_10153393

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10153393
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1820
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000674	Metagenome / Metatranscriptome	941	Y
F065161	Metagenome / Metatranscriptome	128	Y
F074930	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_101533932	F000674	GAG	MNELRPFFLRSIFIGPLLLAWAAGAQEHPFEDDPVVAVRENFVACDVLSQLQRVMENPRFLLAGECEPLRAGDQVRIYARRGPYFCIYPHDRTSTCKWTHEKALSK
Ga0207650_101533934	F074930	N/A	MPNFVRRPDIAHLLVAMLQARKAVDRWSWSHPQESTGEDWWADVLADPRARKRKRRGEFAVKQAAYRLSDEPQATVLVECSKCDWKAAYGRDELIASHGAEYPLPSLLNELAKPGCTRLSNQWDHCGVHYVEPIDRLK
Ga0207650_101533935	F065161	AGGAG	MPIRSLLSETGFNSDQTEMIAKAFDEAWAELQGGLSEPAMSSLVRTALAKRIIEVAPRDGMTAEKLRADAIAHIKNN