Scaffold Ga0207650_10000041

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000041
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 197115
• Total Scaffold Genes: 175
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (73.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000719	Metagenome	923	Y
F004395	Metagenome	440	Y
F057451	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000041161	F057451	AGTAG	MDHSRTGPELRIFQPGFVLLCSLTGAALVGLYLCRYEHVRANILDPGGTFWYFVPLMVPCFAFMIERVQYVRQANFFQHGVDFLVFGLAVGRITGGDVRYISGHTLLLSYMLVSSRSNIVRIAAILVLGQTLFLKYYVWGDFVTSNVGMVLGCTLALLVWLVSRRSQH
Ga0207650_1000004192	F000719	GAGG	MKAIATWILVIAMIFTTVNAAPAKGDDFNSVVKMIEQFYRVKHVGIPFLAKAGMKVATTAARIKGGQARRIAEAGSIKLAVFEDQDFNGDFTKFRASLNEALNATWMPLIQTLSAQDEEQVYIFLKDAGDKVNVLVITIEQRDATVVQVTLSPKNLALLLKDPEGTGKSITQEATINDQE
Ga0207650_1000004193	F004395	AGGAG	MYRYRFPLFLLFILATFASLPAHGQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVFDDGKPRNISYFTREGQARKPLALILILDLREDGAGRFLKRTEILKSMEDELAKLPPGDEVAIMAMDMNNEDEERLWLTEFTNDRAKLAAALARVPAMCVPREGQPPETKSTEVAKTDDSAGKPNDVIETETIRGRNGGTVIRETHRNGSVNVKRTNKKGDVTIELGDVYDMAAAVKDATRKAEATRPNSQLSIVWVSDGIAPIFFEDRDATEQILIRNNVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKHLAGQSGGEAVKVGRPKDYAAGLSRIIGNLTARYSLGFALAEDEIDDGRMHNLEVRVKAQDEKGKTRKLQVSSRQGYYMSSTIPKDAAAKAQF