Scaffold Ga0207650_10000035

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000035
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 215488
• Total Scaffold Genes: 212
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (53.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F043999	Metagenome / Metatranscriptome	155	Y
F071587	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000035159	F071587	N/A	VLDLNAHGIKNAAALLGGWNGWNEARLPIESTPKK
Ga0207650_10000035190	F001519	GGAG	MTLVNSLCAEISIYQGVGEQTGVMVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPNELWPKTNEPVVVHKHDWTVIGSIPRTSRATKKRPKRAHAEQL
Ga0207650_1000003546	F043999	N/A	MEKPVRRILLPGVSDAGAPPPVVIDSRVVVARARRRAVVRDVIDLLLLVCVDGLFLRWPHAHVPLLDRYDSLMVLLGLNAMLVGYVWLARALPRWTARRVASTWCLAERTRFFRSTAR