Scaffold Ga0207650_10000022

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000022
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 318878
• Total Scaffold Genes: 304
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 215 (70.72%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002113	Metagenome	592	Y
F003720	Metagenome / Metatranscriptome	472	Y
F011336	Metagenome / Metatranscriptome	292	Y
F028135	Metagenome	192	Y
F046621	Metagenome	151	Y
F048552	Metagenome	148	Y
F072229	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000022149	F028135	GGAGG	MARPKVEINIPKDLGLTRAQVSELKASFQKQLVDTLKAKQTASKAKSKQMVVDVVAKSKNQVV
Ga0207650_10000022174	F072229	GGAGG	MSRRTLTILITILFILLAWAFFSSERGVAGTLEEIGGWISKLWS
Ga0207650_10000022267	F011336	GGA	MMLTFLIPDRLPSLIVLVGFWIPPAIAGWLAAELLRRSTKRYRILTLIFLAIFVLGYAAAWFLFNLDRMPPYIPGATTDPTFAPPEAVTGLAVFTSALVLPGSAIACALAFRVRGWIDRRMSIGTM
Ga0207650_10000022271	F002113	AGG	MPVLPFMENLLAVEAEAKYLLAAGDRSHEQKLMQELLRIFKEAERVFGPRDTSYQLSVPRLTECASSRTYFLRPLRMARIYLSRDSRTKPEMASLELAHEAIHVLSPVALGATLTILEEGLAEWFAQGYVNRVHGLVFERGSNPKADAVMRAVSTLLAKNKLVIKELRARQPVISKIDEKLLVEVAGIEPNQAKFLCTDFRSYWRR
Ga0207650_10000022279	F046621	GGAG	MLPPTLKWFLSGAVFVLVCCSSLSRADAAVFRDRASFNAASQNLNTIDFESTPNVPDGLGFLELDGVFFHSATNTPTIVIAQNGNKLLRGPTVGEFTRVTIFLPPGTTAVGLDQFNTPMIVAISTGSTGETVTMNAGDNSTFVGFVSDQPIQNLVISLDFPEPTPDVLLDNLSFGQRRAGNEPPVPQLLVTNTGRAAALDSVVTTSETFSIHATHRLSTDGRTRITLFVVGVLLGPADLPFVTVQAEDSQQRLFNLPCEGAGKVKNLSWMSQVTCRVPDELVLAGNVNVSVKVREKVSNKAPLRIE
Ga0207650_10000022286	F048552	N/A	MSTQRPQRYAENHRENKAQLDTRQQIIANALRQRYDEISKTASQPVRKWSRPVAWFESRSDSLSAIPALAADEPVECIEAAPPDEPHFFDDLQASIRGPQRRFELLTTRYLHPLNIAAPSEHRVREHLLERLMVADRARLEQHSLQLLNVDDVLLRLNLIAIYASFTTDLRYLDALNYYYELLPSDWSLNHSLRISFLNFYLRALATHIN
Ga0207650_10000022294	F003720	AGGA	MMKKISFAAVLFAVAMLVAAPVAMATTVSEVQSMITQLKGKVQIISISGKNAESKDRPGLLGQLDGVSLTLDQGKFCNSVTKVRDFQKKVNDMISAGKLNQDPTLGPTGQELLSDGDAIIAALNELQVQSTGSPCSN