Scaffold Ga0207694_10009673

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10009673
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7268
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044569	Metagenome	154	Y
F049717	Metagenome	146	N
F062864	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100096736	F044569	GGAG	VSEKTEDEHDPATIWTGWIRKGELPGTIVGVLVDSWGWTVTLAGALDQEGGGYSLQGRLGPAPATLRVEAIDDAPDEAGQHQGDTV
Ga0207694_100096737	F049717	N/A	MTRRRVMERLERDDMIALEVYAKLVEHHASLDESVRVAGTLIGWSLHQSDGTLDDKLEGLTILMREIRAILLKNHGARRERED
Ga0207694_100096739	F062864	AGGAG	MRYEYKSPRLGRERDAVLTELLSRRGMVTYLAKQLGITKAAVAQWNSIPDWHIPAISKILDIPQYQLRQQPRRPKVDA