Scaffold Ga0207694_10008957

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10008957
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7556
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022436	Metagenome	214	Y
F028841	Metagenome	190	Y
F035814	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100089573	F028841	GGAGG	MSDVRDLEAIAAKLEQAMASLRLVNYGAISAVGYGLVLDARCLLAEAQGRLDSMRKREAA
Ga0207694_100089574	F022436	AGGAG	MLKPQRVFRNHYICDDCDHEFADEMLVVSSSFCPCCDSEIEPYSSEDLFDIETYDDEAEV
Ga0207694_100089577	F035814	AGGGGG	MSMMVMPFTHEVRYAELSYEQKRAIRARLDWLYDWEHGRYIHDHSDHSIAHDLDIPWSLIVYVRVRDYGPLAR