Scaffold Ga0207646_10000082

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000082
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127736
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (67.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006645	Metagenome	368	Y
F012839	Metagenome / Metatranscriptome	277	Y
F049509	Metagenome	146	Y
F073936	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000082137	F006645	N/A	MLIWGVVLCLSGFVLLRTAVRQGRRVALFSSAFWVTFPEFARYRLKRLWPAPLGLAGVILLIWGLVLLFQWLLAYYAARLGHPVS
Ga0207646_1000008234	F049509	N/A	MPEELPPVRPHRTPPAAEPAAIFIAAVTLFAIFINTQNAGPILMLGVIALLLETRLRPRD
Ga0207646_1000008267	F073936	N/A	MTGRTFFAMLFFAGLIAIVMWLFILPALTTYRPTLA
Ga0207646_1000008284	F012839	GGAG	MAIAHATMHQVAPHTWTFQPPEVPVAPMKANCRACRQSVAILRPSAMDLKTGNYVVRGECEHCGSEVLLIVS