Scaffold Ga0207660_11100551

Overview

Basic Information

• Taxon OID: 3300025917
• Scaffold ID: Ga0207660_11100551
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F021376	Metagenome / Metatranscriptome	219	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207660_111005511	F021376	AGGAG	MWVKHLSSLQFLTYVAFFAVVIAAICKFVPGRAPPVREEPYPDEELHAHDAKTAKYFIAG
Ga0207660_111005512	F000280	AGAAGG	MADRTPEETGPARPLVGYRDTGAEPHRFSRAASTRAWVILAILMVCYLGWTLIVYFLEPGLR
Ga0207660_111005513	F065748	N/A	IPAADWPLVYSSLQALKGHVQEYPGCQKLEAFVAVSDGSFRIDCYTTWDTPEQLEAFLERGYTVERMLVDVAGIAAEPTRVVEKVF