Scaffold Ga0207660_10000001

Overview

Basic Information

• Taxon OID: 3300025917
• Scaffold ID: Ga0207660_10000001
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034169
• Total Scaffold Genes: 990
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 664 (67.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031391	Metagenome	182	Y
F064467	Metagenome	128	Y
F076236	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207660_10000001172	F076236	GGAG	MHRAHRRSLAATAATALALLVGATIFVGTAFAAAPVRTVEAVHIAGTFPAGTRCPFEVVRTIDGTLVTTVFTDADGLTTTTFSYKNGKIVYTNPANGATLTAVLAGPAVYIDNGDGTTTVRIPGNDQRYVGRGQGFIVGNTGLIIATLDTATGEILSVDFEAGHQDGTPFPALCVGLE
Ga0207660_10000001276	F064467	GGAGG	VACVFALLLGLAGNGYVSAARIRVPIPIERRLDSWGRDRRLVQTVDWWRA
Ga0207660_10000001528	F031391	GAG	MGEWGDTPPTFDRKVDAWGDHGGAFGDEGEGGGEQYIEVLGNQLWVAGLVDLGRFRRVSDFVNIIDTYMILKDVVVLTRTGDATRLAIPELRILPSEIAVVGQLSDEKPQGSTDSVVFVEKTARRLVVITRTLMIDGDVYIHGGGEIMAFIDASDPKFIPMSNVRVRWLADRRLAARFAFALLQRSQIVGVATQGIKLGGVETTMRRVEMLKARDRAAPPDADGLGGEIGSTVPLADASGGGPGSDEVSTEG