Scaffold Ga0207671_10006222

Overview

Basic Information

• Taxon OID: 3300025914
• Scaffold ID: Ga0207671_10006222
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10706
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207671_1000622210	F035981	GAGG	MNNDDSSGADEILGADEILGADEILAGDEILAGDESAGDESSGDEVGLRLFRRRKKGAPKKLDPIVQNRLTQQGVIVKSAAYSKGRSQSLGFEFLAVQPGATVDVTANPQVLFKPKRLVYTGPANTFVIQDAKIGRSSQFVASGPQAADAYPPTSTVDNMELDTARPGVVITLRIQNVGGVAADFRATIFGLVAE
Ga0207671_100062229	F026424	GGAGG	MMNLSLAQVKKFGTEIQSLKNKHEKAIQKADDVIEQGVDATLASATAFGLGIWQTRADHQKLLGVPVDLAVGLAAHAAGFMGMGGKAGPYLHSVGNGALAAHFHTVGRGVGKEMREKAGLPPIAMSGEGPAEGGSNLSDDALLEMARRRG