Scaffold Ga0207654_10241566

Overview

Basic Information

• Taxon OID: 3300025911
• Scaffold ID: Ga0207654_10241566
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1207
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027650	Metagenome	194	Y
F072064	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207654_102415661	F027650	GAGG	MMEKLTVDAEGRIIIPSEVIQKRGLRPGDKLTLIQSDEGLLVYQGGVDAKTSAWWNRLDDRQRLLAEDDALRYENLSEHERDSIWNQEADFYRSRE
Ga0207654_102415662	F072064	N/A	MLNETIETSGHTTKDGILNLSIKVGATDADVAVIVQGRAVTPEDRVDTNGWPSDFFERVAGSMPDLQRPSQGNLSVGLL