Scaffold Ga0207684_10001919

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10001919
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21575
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018991	Metagenome / Metatranscriptome	232	Y
F030212	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000191912	F018991	GGAGG	MAKIIEFYIPQSFRKVSKWLPPNERGKVLEFPMAVRKSA
Ga0207684_1000191914	F030212	GAGG	VDELVDTLAWRYAVISVRSEPDRERLVIAYPDEETLRDLIAAPSIVALGYTSRADALKNIDRCETTKASLKRLLKTASLHPNMTFLTECRASLRRLAGGFGRSGSSRVMRNLLHNGLAAALIFFYSRNVLSSTVRAFISF