Scaffold Ga0207684_10000095

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000095
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165210
• Total Scaffold Genes: 190
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 116 (61.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000443	Metagenome / Metatranscriptome	1132	Y
F005160	Metagenome / Metatranscriptome	410	Y
F007516	Metagenome / Metatranscriptome	349	Y
F023082	Metagenome	211	Y
F086866	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000095128	F023082	N/A	VITARRPEDVAREVEELVRSGRRRFVIQAIDHGGQLDLERLGAARYAAGLQSEVELGEAAPVAAVAAR
Ga0207684_10000095143	F000443	N/A	MAGPSGGFAAANLSWSKVDVLTNYQRLTAEIQVRGGRLRETINDPEPLFHLRNVSAEPLLVGAVPLSGVPEGLFNKNYIGGIRTIEPEPPPPDAVTDLIRRYVMFQAAGFMVTGAAEFPRATETSMHTEILMKNRFFPILDATVTIFGVAGKSWTQPNIWVNRDLMLATYLG
Ga0207684_10000095147	F005160	N/A	MWLSPVDELLMPHPSALLRLLGFAVAAGLAMAGVQPVVAATAGEVHMRWALGLTAPAVIMAGLVLAVARMSDRGDGVQPPWYSAWVLLPGSFLLAGAAAMCIFGALVEFSLIPWTMWMLLLSGGLLWMAGLVMVRSHSH
Ga0207684_100000955	F007516	AGGAGG	MYRRINPTSRKQLPMRMLFQPLGNGTFHRACEADSFRGLVAAMVDDPAYESGDVEKRLVNRLRLADELVLLAQVANEPSLIVGDRDADLTINVASDERFIRSLDRLGLVSLEPTLRAHV
Ga0207684_100000957	F086866	GGA	VTAIEIGRRPVSAGELLVLPTLLQVSLTELLAVEKDEVGDVEGVLVTKAALDQIARGRPLEERESEFFVTPPRVEASATESERKAARNLSQATNSTITVPDLIAMAQLQWEGRRLDEERERRLKTSRRRGSLARQRGHITVVLQKELLEYLTTQQTNKARQSTRRSTQKK