Scaffold Ga0207684_10000026

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000026
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 316711
• Total Scaffold Genes: 333
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (65.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004437	Metagenome / Metatranscriptome	438	Y
F029693	Metagenome / Metatranscriptome	187	Y
F065652	Metagenome / Metatranscriptome	127	Y
F092604	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000026183	F029693	N/A	MHASDVALQDFFNIPNALFRFMSPVSVNATASFDIQWTGPVTKRGRVTASPGSVGELVMTSATMTWSASNSRGFHFVSNPSGTKSVFAQLGKISNGVFA
Ga0207684_10000026187	F065652	GGAGG	MAKKIFGLVGIAGLLFGFGTVTSFAADDGFSQPPAAAANCDAGHGAFGAFSHHFEFQDPSGVNWIAADAKEDGGLGHDTGPTNSGFSQFCKTQ
Ga0207684_1000002690	F092604	GGCGG	VIEPKDVVIAILGSSAGLGGFVLVFLGVIIASYQSFQGAVPAQVVQPYRTAGGILLATFALCLSSVAICLFWLAGGGRADLYGVTVGLFVVLLFAVFAAAAWVTRMVLWR
Ga0207684_1000002692	F004437	GGAGG	LAKDPSEQAKKFIDASLRGRSKPPSKAAYERAVKLARAAIEELTLLAGRTQG