Basic Information | |
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Taxon OID | 3300025910 Open in IMG/M |
Scaffold ID | Ga0207684_10000007 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 612969 |
Total Scaffold Genes | 677 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 480 (70.90%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006566 | Metagenome / Metatranscriptome | 370 | Y |
F006645 | Metagenome | 368 | Y |
F012839 | Metagenome / Metatranscriptome | 277 | Y |
F014330 | Metagenome | 264 | Y |
F020969 | Metagenome / Metatranscriptome | 221 | Y |
F028129 | Metagenome | 192 | N |
F073936 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207684_10000007127 | F012839 | AGGAG | MAIAHTSMHQVGPHTWTFEAPAVPVAPMKANCRACRQSVAILRPSAMDLKTGNYVVRGECERCGAEVLLIVS |
Ga0207684_10000007142 | F073936 | GAG | MTGRPLFSMLIFAGIVVAVMWFFVLPALTTFKPTLP |
Ga0207684_1000000715 | F014330 | GGAGG | MAVVHEHEDGDGSSAAVVAIFLIALIVILAIFFYGFAFAHWFGVGNPTIVVPNTSSAPSIAASASASASASP |
Ga0207684_1000000721 | F028129 | GAG | MHQPGNILSLRFDAPAVAHTSRTPAQLTFCYQCHSAVDLGATTTALRSGHWARIGTCAHCGTTITRILKAS |
Ga0207684_10000007348 | F020969 | GGAGG | MSLSKILLILALICFILEALSGRIKMKFGFGLLAAGLAFLTASYLF |
Ga0207684_1000000752 | F006645 | N/A | MLIWGLLLCLAGWVLLRIAVRAGRRAALFSSAFWLTFLEFARYRIRRLWPAGFGLVGLILLIWGLIFLFRWLLAYYNARLGHPLS |
Ga0207684_10000007627 | F006566 | GGA | MVDTQVAQSGWFDWLQQETSFVPERAEDLVVTSVRVLQLNGRFLYLKATTDLGQFSAGERRILEALTHQGDTVFVAVSPDPGHIRLSYRMPDLENAVAFDADGLRGLIRQWAIWASATESSSE |
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