Scaffold Ga0207705_10150224

Overview

Basic Information

• Taxon OID: 3300025909
• Scaffold ID: Ga0207705_10150224
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1745
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F019913	Metagenome / Metatranscriptome	227	Y
F066970	Metagenome / Metatranscriptome	126	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207705_101502241	F066970	N/A	MWVQHLSSLDFLTYVAFFGVVVAAICRFVPGKAAPVR
Ga0207705_101502242	F000280	GGAG	MARRRMPARPLSGYRDVSGGVRHSRRNVIRAWVILAFLIAIYLTWTLIVYFLEPGLR
Ga0207705_101502243	F090360	N/A	MAAAPPFVSYSSMSEAIVSSTDWPFLYASLQAFKAHVQEYPGCQRTEAFAALQDDGSMRIHCYTTWDTPEQLDVYLEYGYTFERLLGDVGLPSQARTLLMEKLF
Ga0207705_101502244	F019913	AGGAGG	MAMPSGDSPQKANAFYHYLLSKHQTDRRADTWHVDWLSLAWMWGFVAALSVILIWWVWQYRTTRHRSRVYPVDSWGGFTTELAGPATRFFVLLTAILTGFAVALIVGHIVNGQIF