Scaffold Ga0207645_10107152

Overview

Basic Information

• Taxon OID: 3300025907
• Scaffold ID: Ga0207645_10107152
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1807
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021560	Metagenome / Metatranscriptome	218	Y
F030490	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207645_101071522	F030490	AGG	VLQGHLERLGVSSFWLRSALDAIRYCEQGDFFQPVFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLNLYWSEDNPSVRPDLEAAFRDMVSFAENELPEATPAQDEDARHLLSALGSGGYVWRVAESTAQTTDLNLRADLVKEVEAVVASFPESEPEERLLAWAATECVNRNLLFGSASPGGWAAGGEFLRRGFRFAEGHVFSEDVALPPKDQWYAFSFGVALYDVDAFLATRPPRPAGRAGHRGRLSQQAAR
Ga0207645_101071523	F021560	N/A	LIAVTLAGLTACSSGSGEATSTGPLALDQRVVTEEDAPGSKPDPVEKRQIAPDEQAFSDTMGDAFINPTDEEKAAFGTLGFVEAIRDTRYFGDVHSRDDLHTFSLVVQLDSPDGAKEMADFFHTDGVRPCPESCAFSVTEFDVDGIPGATGVRRYASEEDIQAAGTGENRPYDSYAIQFADGDFAYRIELGGPPGKPSEDKAVEIAQNLYDRVHGRPTAG