Scaffold Ga0207645_10018968

Overview

Basic Information

• Taxon OID: 3300025907
• Scaffold ID: Ga0207645_10018968
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4517
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056841	Metagenome	137	Y
F083323	Metagenome / Metatranscriptome	113	N
F084803	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207645_100189684	F084803	AGGAGG	MEDTEIQPATEVGTIVVSTVGPDGAWVDTPHHLAEFEQSQHGAVFGRLVVPWPRVERVTWSLPPREAEIDQPHSVVRVVIEDGSIDGEELVVASERFDVTPWAAGLLIDDLVDAERGLVSQRRILVPWHAVREYERTTWATVHDDPLTPSRPDAQL
Ga0207645_100189686	F083323	AGGA	MRLSDERGGAVAKLLGILLVLAVCASAAVYVYGKNQHPLAIDEVHVATSDGQRAPATVGVAPGRAVYVATIVRNDGRLPVTLEGLAPAATSPTDAYVPVSIELGDGKTPKPANGAFDPPSLDPGTGIGVVVTYAINPNLECGHFGDAPSDPTPFPSLPVRLSSYGVDTTQTIALDQGAPTVSGITKTTCGRATP
Ga0207645_100189688	F056841	GGAGG	METEITFLGGRIETFPPTADIKLTQFGLEVMQRDGDDAVRVLFPWNQIEKVTQRGAAVAAVYTW