Scaffold Ga0207645

Basic Information
Taxon OID	3300025907 Open in IMG/M
Scaffold ID	Ga0207645_10005952 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025907 Open in IMG/M

Scaffold ID

Ga0207645_10005952 Open in IMG/M

Source Dataset Name

Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8788
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8788

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (40.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207645_100059523	F008444	AGGA	MPVQHTYTMKAGTKSKLLLVYATSAESTVGKTGLASNRSAASAAYIREGDSSARPVTIVQGRVGEWGSGALAEVDPELLPGLYQFGAPDEMLAEGSARAVLLIRFPDTVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELAAKLNVKKES
Ga0207645_100059524	F010880	N/A	MSYALKKGTTSKILLIYALDATDMRLGKTGLSSRTPDSSAAYIREGDAQVRRVPLVNGKLGEHRAGSFVEIESKLLPGVYQFGVPDEMLAAGAETVTLMLKFPNAVIEPIFIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGSA
Ga0207645_100059525	F014022	N/A	VLDEVKQVGNMVQAAARSAQPYRRHILGLPLQRSLFGQAARAATTIGLPGLASELDFPARLDENGDLFLDRSQITALTKALPSWFTPETLELMHTTHVAACDALVDASENAARVAASLSSAARKLSEDLANRMALVLAYGILSKFVPDVLMHALANAGDVEPRPFPEKSAGAELMQNTFALYQACCALNYTPQRLQREWPRVAPEVFHLVREFCNRQTGFGPLAWDAPGYEDPNYVVGLLHSAFTEVDAEQVRRRLSFAKRPAVSPSPAGVRTKIAALRRVLGFWLDFLERETWYVRRAFYVGMIPLLQQLAAGYRQKIPPFQLADLLFLDIRELAAGVADPAVIHARRQRYMENTEYLSLRGVDPGRLATMLGSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207645_10005952

Overview

Ecosystem & Geography

Associated Families

Sequences