NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207699_10109523

Scaffold Ga0207699_10109523


Overview

Basic Information
Taxon OID3300025906 Open in IMG/M
Scaffold IDGa0207699_10109523 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013828Metagenome / Metatranscriptome268Y
F079241Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0207699_101095231F013828AGGMGKWRRTIALPFLISLGGCIEITTYVSPAASGTVIDATSKKPISGATISVDNQPGLFTQTNSDGQFVLVPTTRTTRIFVLAPYRSIPPGGAIVVFADGYASREIVVKGGDAPLLVSLVRV
Ga0207699_101095232F079241N/AMKLVGLLLMLLCSLPALGRQCGDPSAKHWSTVLHLAVGLVTLQWTGVHEGGQAVCRLSYRNRQGQTQALEVWGEPEPNVTENLVAFASCADDGCDNKLLVADIIRGVVLEGHLPVSTQQTYFSLKWAASGRTLSVEGESFGGQPPRRFTCTVAERVDCATSGI

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