Scaffold Ga0207647_10003202

Overview

Basic Information

• Taxon OID: 3300025904
• Scaffold ID: Ga0207647_10003202
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12277
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020547	Metagenome / Metatranscriptome	223	Y
F028243	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207647_100032028	F020547	GGAG	MWFFMAASGPTRALLQEIRVVDVPDENVPGYFLLLEMALYAQRRVTFVQQPLVDRPVR
Ga0207647_100032029	F028243	N/A	MADHASLTDRLVLIHKWAALLRVTFKAGFVSGHKSKAAGSELLLNICRRALGRDPFVRLMAIAAAHLAFQHRVMMRQLKRCANVQVTLETGVRRLSRIDDGTGTPAGLNVQTPGPVTRFAAHVLGVVPFCLEACMRGCPKVAHDLFVAGCAFL