Scaffold Ga0207680_10399294

Overview

Basic Information

• Taxon OID: 3300025903
• Scaffold ID: Ga0207680_10399294
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 971
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033474	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207680_103992942	F033474	AGG	VPVHPFAVGVTVIVALIGKIVAFVVVNEGTLPEPLAARPMAVLLFVQVNVVPLTGPDKFVTNAVTPAQ
Ga0207680_103992943	F033474	GGA	MSNVVGAPVHPFADGVTVIVALIGKTVALVAVKGGILPEPLAASPMAVLLFVQAYVVPFTGPDKFVTGAVTPAQ
Ga0207680_103992944	F033474	GAG	VGVPAQPFAAGVTVIVEVIGKVVALVAVNEGMLPEPLAARPMAVLLFAQVNVVPLTGPDKFVRGAVVPAQ