Scaffold Ga0207688_10005195

Overview

Basic Information

• Taxon OID: 3300025901
• Scaffold ID: Ga0207688_10005195
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7079
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023868	Metagenome	208	N
F061000	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207688_100051953	F023868	AGG	MSDTRIGPPRWAHALLELLVRPSDVESIPGDLLEEYREVKRPLLGQRGADAWYIAQTFSVLWRVVWPCVVAIVVLRILSFPLPRGWNPSLVPTPGASVLDAAIFVWAGYYGSQRSGRLSTGIVTATVTSVIGFTTFFVYAAITRPTLLLAPFGNPFIFVIMAILLAIAVAIGIVAGMAGAVAGRWLPPNRWRARLS
Ga0207688_100051957	F061000	GGAGG	MRRPIAMTSLLMLGLWNLGWEPTAVAQSARDAQVPVRTLKRSIIEGPSASGDMTVLSEVVDETVRRDARTSERTSSEFTTDANGRRRLVSVMEEQDVSQQDGGHQITREFTRLDVDGRSRITRREREQLSARGNGLFVTEIEVTEPSINGSGFVPTERIEQQERRVGDQVVERETTWSINPRGSGRWSVLEQRVLTRDAAGGSAEAVEFIHRADSSGNLVQSERIVSREWTVRGQAFRTDEIYRRDINNSGSLTRQPVQHVELVQTTLSGGGLDTARTVSGRVGDRLQVIESAVERSRPDGSGGLVVEQEVQRSVVDGQFHTVLTGTRQESQ