Scaffold Ga0207642_10049974

Overview

Basic Information

• Taxon OID: 3300025899
• Scaffold ID: Ga0207642_10049974
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1883
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008787	Metagenome / Metatranscriptome	328	Y
F009550	Metagenome / Metatranscriptome	316	Y
F018781	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207642_100499741	F018781	AGTAGG	MTLDTDDLDDRQSRLLDVLCEEFESAPLLDAANGPGLYHRLRAHLAAAGATDGDFEFLTGQLARLVIESNNPFTPRQKTAQLKLISERFALRDFHLVVDRGAVVSLAFAEPPTIH
Ga0207642_100499743	F009550	AGGAG	MSGSLHPTETHRRRHRKEKRNKLRAKLRVAPAAGRAAIEAKLLKTYVLGSEPQPSKGTES
Ga0207642_100499744	F008787	GGTGG	MQSRHMTKPIQTRRVKEALVRVQNLFMDPGARLTTADAAQMAGLDSQVCGALMQSLVEAGFLEQRLRGVFVRTPATGKRIV