Scaffold Ga0209425_10062823

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10062823
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2382
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F014069	Metagenome / Metatranscriptome	266	N
F026154	Metagenome / Metatranscriptome	199	Y
F028035	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_100628231	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTFELMSSDPRFKKLPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDIS
Ga0209425_100628233	F026154	AGGAG	MNGVITVVRFVVYTVGGLAIRKSWNWLIEDVDPIPGSQEFDNEYYQTKSKYKRLTKLKEEHEAYRKNRRSNS
Ga0209425_100628237	F005743	AGGAGG	MKRNLIIYKVDYANRHEDYNQRTGKFVRTKRIVMTPDEVDQTDGYWRNHRAVEKKFSKQMNNGAEEAYWDCKYRVLRVRKA
Ga0209425_100628239	F028035	N/A	MLQQVEGDTDKHSNYQLNQYEFPFPENSVLIERDKEMNRILNKPIITIANDSNNCQQ