Scaffold Ga0209425_10024169

Overview

Basic Information

• Taxon OID: 3300025897
• Scaffold ID: Ga0209425_10024169
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4658
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020791	Metagenome / Metatranscriptome	222	Y
F085649	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209425_100241692	F085649	GGAGG	MQTFTFTLNGDGLWGAEAGRKVTLSGFTVSYMNADTYDKCNEGDDNAVIGHVTVDHDSTWDVYTDTGFQEAAANYTNIMGLDFTEQGMQNDNQASMEV
Ga0209425_100241695	F020791	AGGAG	MIKALMFMAVGAVGAYLYMNPGDISGAQDMVKEGINKGATIVQEATQ