Scaffold Ga0208916_10000142

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000142
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34592
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (19.67%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F045753	Metagenome / Metatranscriptome	152	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000014210	F027518	N/A	MNAETEITLIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLSGIAVTAGVVGGLIVQFILKFL
Ga0208916_1000014219	F041764	AGG	MNIETGGFLKLELFNDDANLFLLALTKITKESAAMGFKTYGLNEQEVKVLNDILENLG
Ga0208916_1000014224	F028175	N/A	MAITIDDQPYQYTPVGQRLMLVASSTNVANAGFRFVFDFGSFQVNVQPNASSKGILDLAPIFRESLQHDASLLTSTNTTETSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVFAFLAEYQVSDGYKPDPNGRYALSGANRYVLSERTYNTHKWIEASARGLSNDWVYIPTRLADYGIMYTPSATALLASNDFDIAVFSTYDNNNALIDTVKVELSDENNIVNVIGANPMNLISGGLDFTNVKYYTIQIGKVIEFPIYTPSSNVYCFYIIPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNESTFGFNTFDRGATDRYVTTTKGLQINSDWVSIGEFNLLQTLCRSNDVYIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0208916_1000014225	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNFTNAVASGTLEKSLKYRLKIKGKNINVSIYAKGKASQYFLARENGRRPGATPPPVSAILDWMRIKPIKLRDKESGKFQKPTEALKRQVAFLIARKIGRDGIKGWKAFDYAYENIWDEYEAKIFEAFGKDFGANLDNELNDI
Ga0208916_1000014238	F023350	N/A	VTLDKYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0208916_100001424	F019140	N/A	MKNTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKNKEDAN
Ga0208916_1000014243	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVDQEQHLVFIDDLDNMYNINLRGRFFRNDEPEFDLDFVTLEKDGISFSFDVNIFDDHI
Ga0208916_1000014254	F012871	GGA	MLRNASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQILHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKVNLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMLAEDLHNYKQGKYTVIEIRAVSLMRWLEESKQITVDTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ
Ga0208916_1000014257	F019140	N/A	MKPTPLYEALKITQEREREIINSVAVYFQQGKVLGDVLLELSQRKDMNAKEKIYCSLMIGSMMTKNNEDAREQN
Ga0208916_1000014258	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNAFLSEAIEFSLKFYVEESKVKLKEQTST
Ga0208916_1000014259	F021113	N/A	MDKREYQPDALVVVIATSVFWLLVYFAFSNLKPKIETQVELKKQDSIINYNEGEYQMLLEETIELKEQLSYYENAQHSTKTTYRTRRDTILRVDTIRKIDVIYLVNACDSVIASDSLVINNLTEQLNIEERKINNLQEVVVAYEQKEQLLTEEINTLNVDKKQLDKQKRRRNRALVVTSSVAILSTFVLSILL
Ga0208916_100001426	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSLRFYVQLSKVKHSEQTST
Ga0208916_100001427	F021113	AGGA	MNRNILAAILLFIGTSILWLVVCWNIWGKVHAKNATTEIQKQDSIINYNAGEYDRLLAEQIELYKQLRTYEDAQLAAKTTYQRTRSAIVVRDTITRVDVIHLVNSCDSVIASDSLVINNLKKQLNIEEQKIDNLQEVVVAYEQKEDILTEEINTLNADKKKLEKQKKRRNRALVVSSSVAILSTFVLSVLL
Ga0208916_100001429	F039140	N/A	MKEWLKSLLSNCSKVSSKRVIAIFVVTNLLIICYIATFTTYICPIEMFDTLALLTGGLFGGTVIEKFTKKTKNGNTENNSSNNS