Scaffold Ga0209335_10019072

Overview

Basic Information

• Taxon OID: 3300025894
• Scaffold ID: Ga0209335_10019072
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4996
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022653	Metagenome / Metatranscriptome	213	N
F022837	Metagenome / Metatranscriptome	212	N
F032261	Metagenome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209335_1001907211	F022837	AGGAGG	MSQLHLRMQFKDHEYHTTHDGDLILFNLEDYQPYEPENCLHEAYLFCDIIIDDKPVDHYALTASQYDAMTATVEEGSYYEY
Ga0209335_100190728	F022653	AGGAG	MNIFKKLWLFVCLETKGLLSDLMTGNLTETEKDNLFWLFVTLWGLVMVTFFILHESTGAVFEL
Ga0209335_100190729	F032261	GGAGG	MNIDTEADYVLEAYWWSHKLVNNVSRRHKKFVLAYITAYRDYEDDESELLQLTEMLQLKDKLVSVYGSHPDGEVVVELTIRQEFINA