Scaffold Ga0207682_10003800

Overview

Basic Information

• Taxon OID: 3300025893
• Scaffold ID: Ga0207682_10003800
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6482
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015747	Metagenome	252	Y
F036726	Metagenome	169	N
F104385	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207682_100038002	F036726	N/A	MELDANVANELVELIKTKNGLQDSHVATFELHWRQSTFNDALDKAVKLSRAQAHEVWRALQLLVSRESLVGRPAAVVELAMQFNPFPVTWRVIADKALEYEHLAVKQKR
Ga0207682_100038004	F015747	N/A	MDNNSQVTGLRALVANVMLERARELSDLQACEVWRLIQLIDTGASPKSVRPATLQLAMDFNRFPHARRVIEEKALGHGRATGTGGNIN
Ga0207682_100038006	F104385	GAG	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP