Scaffold Ga0209631_10076876

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10076876
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2010
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020385	Metagenome / Metatranscriptome	224	Y
F030154	Metagenome	186	Y
F046471	Metagenome / Metatranscriptome	151	N
F063160	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_100768763	F046471	AGGAG	MTEECQECHGEGVCEYERWERYGDTYEPYAEYSICEWCLGTGQLESEE
Ga0209631_100768764	F030154	AGGA	MTYTIATRDTIAQQFVPVSGFILMPLRQAQELAQEYRASGIDAVAFNTSVGV
Ga0209631_100768765	F020385	AGGAG	MFNLLNKSIKPTVNGVMTKPTFKEILEERQEYLDALKSKGDLYALGFLESSFLYHMGDNGLEPLNPSQLETLAKWKEATQ
Ga0209631_100768766	F063160	GAGG	MKDYEVMLEDAHGNVSEFTVSIPDLVENVTEYVREEYPESSIVYIMPKGF