Scaffold Ga0209631_10016288

Overview

Basic Information

• Taxon OID: 3300025890
• Scaffold ID: Ga0209631_10016288
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6217
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018906	Metagenome	232	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209631_1001628812	F018906	AGGAG	MKTCKVNPLKLNETRFDHEAHKGGRYVKRYYFSNGLGASVACHGGTYGGHAGYFEVAIVQYPIGTDGEITGELIYDTQINKDLGCVDVIGWLDFGGVDAILKQIRNYNTGEYAYNE
Ga0209631_1001628814	F053980	GGAG	MNGYELLAQFEKDIKECLTVPNHWLPEEFQDNRTDCVSLQDIENKCNARDKTITMSADEEDSIERAKRVQIYRDQLERGEEIQYNPIV
Ga0209631_100162887	F040582	AGGAGG	MGFIEVDFLSIIIGYMVGVALMWSLCNTFYGENNEQRTEKDSKNTRPRYDRRYHMLYGDSPE