Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1009065 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1009065 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6956
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6956

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N
F012219	Metagenome / Metatranscriptome	282	Y
F024791	Metagenome / Metatranscriptome	204	N
F097201	Metagenome / Metatranscriptome	104	N
F101022	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10090651	F101022	N/A	QYRGWSIEDGTSDPVLTWVDMGAINVERYDVRTATRQAWLIKASRVAADIDAKEGQSDVKLSQLMQHCLTMAEKYRPVAFA
Ga0208644_100906510	F024791	AGGAG	MPFTRTSALIGENCTVTVAFGGYQDGSPSAFTAETYTCIARSVRFSTSVNTVDVSALCDSQNKAQATKANGSVEVEFLVDSVVGPIFFGKDGYYCQIVVTPGTLTAKTFVGVVTGTGISVANEEAVTESATITLGANGVATAWS
Ga0208644_10090655	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGTLLGTFGQDGTSVNVWWVQQDEGFQYSIVNQFAVVMAQQIASGDAE
Ga0208644_10090657	F009888	GAGG	MALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGITYTNIATGSAYTFASGSVTLTKQYSAQGILSILNPAAYGTAANIRVTVSLTVGTDVRRFGPLEIEVLAP
Ga0208644_10090658	F097201	N/A	MGFSLKKVRLDSYQRNLGKLSMAVGKAAADVQGEASRSIAMNSGKYREYYGRVEHPHWSSPPGTPPNSDSGTLANSIMPQRVNATTYLVVVNAKYGVPLELGWISKAGNHVPARPFLRPAVEYVAPSFQAAVKSILKGNN
Ga0208644_10090659	F007170	AGG	MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMGIYNTIAPQIDPISRKQPITPYVVFDRAGNAGQDQDTLCGSRVFTYPTYRITVWDTASGAVSMAQSAAIMSRIDTLLDNQHVSSTTPRFYCRRESTAQTFGLESGGRTDFGVTAVYRMVTQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1009065

Overview

Ecosystem & Geography

Associated Families

Sequences